普通油茶开花与授粉期转录组测序及相关基因差异表达分析

Differential expression analysis of genes in the reproductive process of ordinary Camellia oleifera

来源:中文会议(科协)
中文摘要英文摘要

为了解普通油茶开花与授粉期转录组特征,并寻找普通油茶该时期生殖过程相关差异表达基因,为普通油茶生殖分子机制提供研究基础。以普通油茶湘林 210#4个时期(花未开、授粉 2-3 d,授粉 7 d和 20 d)的花为材料,采用高通量转录组测序。结果表明:除去低质量数据后共得到 21.57Gb的Clean reads,在阈值为 log2(倍数变化)>1或log2(倍变化)<-1时,共检测到 85 134个Unigene(46 872个上调和 38 262 个下调)差异基因表达。基于GO、KEGG、Pfram、SwissProt、eggNOG和NR等 6个数据库进行相似性比对,依次分别有 33290、26896、29515、26821、38129和 40433个基因被注释。差异基因GO功能分化分析表明:基因大量富集在生物学过程,有 71367种不同的GO功能,主要有生物过程、DNA转录调控、DNA转录、蛋白质磷酸化蛋白质磷酸化、氧化还原过程、防御反应;在KEGG分析中,植物激素信号转导、淀粉和蔗糖代谢富集的差异基因数最多,分别有 404 个和 313 个。差异基因在油茶柱头FR1时表达量最高,两条通路差异注释基因分别为SPL8、AHP1、SERK2、SAUR67、CXE16、SAUR21、EIN3、TGAL4、ARR6和BGLU40、SBEI、TRE1、Os10g0521000、exgA。

In order to understand the Transcriptome characteristics of common Camellia oleifera during flowering and pollination,and to find the differentially expressed genes related to the reproductive process of common Camellia oleifera during this period,it provides a research basis for the molecular mechanism of common Camellia oleifera reproduction.High throughput Transcriptome sequencing was used to sequence the flowers of the common Camellia oleifera Xianglin 210#4 periods(flowers not blooming,2-3 days of pollination,7 days and 20 days of pollination).The results showed that 21.57Gb Clean reads were obtained after removing low-quality data.When the threshold value was log2(multiple change)>1 or log2(multiple change)<-1,85134 Unigenes(46872 up-regulated and 38262 down-regulated)were detected.Based on six databases including GO,KEGG,Pfram,SwissProt,eggNOG,and NR,similarity comparisons were conducted,and 33290,26896,29515,26821,38129,and 40433 genes were annotated,respectively.The differentiation analysis of GO function of different genes shows that genes are largely enriched in biological processes,with 71367 different GO functions,mainly including biological processes,DNA Transcriptional regulation,DNA transcription,protein phosphorylation,protein phosphorylation,redox process,and defense response;In KEGG analysis,there were 404 and 313 differential genes in Plant hormone signal transduction,starch and sucrose metabolism enrichment,respectively.The expression level of differentially expressed genes is highest in Camellia oleifera stigma FR1,and the differentially annotated genes in the two pathways are SPL8,AHP1,SERK2,SAUR67,CXE16,SAUR21,EIN3,TGAL4,ARR6,BGLU40,SBEI,TRE1,Os10g0521000,and exgA,respectively.

龙雪燕;古龙;谭玉姗;李万春;胡玉玲;

浙江农林大学 林业与生物技术学院,省部共建亚热带森林培育国家重点实验室,浙江省森林芳香植物康养功能研究重点实验室,浙江 杭州 311300;湖南应用技术学院 农林科技学院,湖南 常德 415000;湖南应用技术学院 农林科技学院,湖南 常德 415000;浙江农林大学 林业与生物技术学院,省部共建亚热带森林培育国家重点实验室,浙江省森林芳香植物康养功能研究重点实验室,浙江 杭州 311300;;

第八届中国林业学术大会

普通油茶 花期 转录组 差异基因

Ordinary Camellia oleifera Flowering period Transcriptome Differential gene

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